Hierarchy For All Packages

Package Hierarchies:

bd, bijfit, bijnum, classifier, features, features.color, features.filterBanks, FlowJ, of3d, Reconstructors, registration, retina, scripts, segmentation, stereo, stereo.algorithms, stereodisc, stimulator, usbcam, va, VJiso, volume, VolumeJ

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.Vector<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • features.Features
  • retina.AcceptOID (implements java.io.FileFilter)
  • stereodisc.Analyzer
    • stereodisc.ANNAccuracy
      • stereodisc.ANNMapper
      • stereodisc.CDRStatistics
      • stereodisc.Illustrator
      • stereodisc.ObservationACDRs
      • stereodisc.ObservationStatistics
      • stereodisc.ObserverAccuracy
      • stereodisc.ROC
    • stereodisc.IxConverter
    • stereo.StereoAnalyzer
  • retina.AngiographAnalyzer
  • classifier.ANN
  • stereodisc.AutomaticAligner
  • Backprojector_ (implements ij.plugin.PlugIn)
  • bd.BDColorSeparator
  • bd.BDSeparatorLattice
    • bd.BDRedWhiteLattice
    • bd.BDYellowLattice
  • bd.BDVarDetector
  • bijnum.BIJfft
  • bijnum.BIJfht
  • bijnum.BIJfit
  • bijnum.BIJfunctions
  • bijnum.BIJJacobi
  • bijnum.BIJknn
  • bijnum.BIJmatrix
  • bijnum.BIJmi
    • registration.SearchMI (implements numericalMethods.function.nmDoubleArrayParametrized, numericalMethods.function.nmDoubleValued)
  • bijnum.BIJmulticlass
  • bijnum.BIJpca
    • bijnum.BIJgifa
  • bijnum.BIJShortMatrix
  • bijnum.BIJstats
  • bijnum.BIJtransform
  • bijnum.BIJutil
  • bijnum.Blas
  • bd.BlobDetector
  • stimulator.CCDcontrol
  • features.color.Channel
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Canvas (implements javax.accessibility.Accessible)
      • ij.gui.ImageCanvas (implements java.lang.Cloneable, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
        • retina.OIDCanvas
        • VolumeJ.VJViewerCanvas
    • java.awt.Container
      • java.awt.Panel (implements javax.accessibility.Accessible)
        • java.applet.Applet
          • IJApplet
          • Nearest (implements java.awt.event.ActionListener)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • ij.gui.ImageWindow (implements java.awt.event.FocusListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
            • ij.gui.StackWindow (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.MouseWheelListener, java.lang.Runnable)
              • retina.OIDStackWindow (implements java.lang.Runnable)
                • retina.OIDWindow (implements java.awt.event.ActionListener, java.lang.Runnable)
              • retina.PCAWindow (implements java.awt.event.ActionListener, java.awt.event.AdjustmentListener)
          • ij.plugin.frame.PlugInFrame (implements java.awt.event.FocusListener, ij.plugin.PlugIn, java.awt.event.WindowListener)
            • Align_Stereo (implements java.awt.event.ActionListener, ij.plugin.PlugIn)
            • Cropper_Scaler
            • va.PVCAMInterface (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener)
            • stimulator.StimulusJInterface (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener)
            • va.VAInterface (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener)
            • VolumeJ.VJUserInterface (implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, java.awt.event.ItemListener, java.awt.event.KeyListener)
              • of3d.OF3DUserInterface
              • VolumeJ.VJSurfaceJ (implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, java.awt.event.ItemListener, java.awt.event.KeyListener)
          • stimulator.StimScreen (implements java.lang.Runnable)
  • ContrastNorm_Ruggeri (implements ij.plugin.filter.PlugInFilter)
  • ContrastNormRuggeri
  • stereodisc.Conventions
  • volume.Convolver
  • features.CorrectiveFilters
  • registration.Correlator
  • stimulator.Cycle
  • stereo.algorithms.Cyclopian
  • retina.DanConverter
  • Depth_Coded_Stack_ (implements ij.plugin.PlugIn)
  • bijfit.DesignMatrix
    • bijfit.DesignMatrixExponential
    • bijfit.DesignMatrixGamma
    • bijfit.DesignMatrixLinear
    • bijfit.DesignMatrixPoly
  • usbcam.DeviceInfo
  • volume.Diffusion
  • Diffusion_ (implements ij.plugin.filter.PlugInFilter)
    • Diffusion_4D
  • volume.Diffusion3D
  • stereodisc.DisplayCapabilities
  • retina.EpochSorter
  • volume.Equalize
  • features.Feature
  • features.FeatureComputer
  • retina.FileNameFilterAcceptOID (implements java.io.FilenameFilter)
  • features.filterBanks.FilterBank
    • features.filterBanks.Canny
    • features.filterBanks.Gabor
    • features.filterBanks.GaussianDerivative
      • features.filterBanks.InvariantGaussianDerivative
      • features.filterBanks.RadialGaussianDerivative
    • features.filterBanks.Hessian
    • features.filterBanks.Stereo
      • features.filterBanks.StereoDoG
    • features.filterBanks.Variance
  • Find_Disk (implements ij.plugin.filter.PlugInFilter)
  • Find_FOV (implements ij.plugin.filter.PlugInFilter)
  • FlowJ_ (implements ij.plugin.PlugIn)
  • FlowJ.FlowJDisplay
    • of3d.OF3DDisplay
  • FlowJ.FlowJDynamicColor
  • FlowJ.FlowJError
  • FlowJ.FlowJFleet
  • FlowJ.FlowJFlow
  • FlowJ.FlowJLucas
  • FlowJ.FlowJMapper
    • FlowJ.Flow3JColorNoiseMapper
    • FlowJ.Flow3JDynamicColorMapper
    • FlowJ.FlowJColorNoiseMapper
    • FlowJ.FlowJDynamicColorMapper
    • FlowJ.FlowJQuiverMapper
    • FlowJ.FlowJSpotNoiseMapper
  • FlowJ.FlowJSingh
  • FlowJ.FlowJSpotNoise
    • of3d.OF3DSpot
      • of3d.OF3DHalfSpot
  • FlowJ.FlowJUras
  • Frequency_finder (implements ij.plugin.filter.PlugInFilter)
  • bijfit.GeneralLinearLeastSquares
  • GoldFinger_ (implements ij.plugin.filter.PlugInFilter)
  • Grid_maker (implements ij.plugin.filter.PlugInFilter)
  • volume.Hessian
  • Horiz_Correlator (implements ij.plugin.filter.PlugInFilter)
  • Hough_ (implements ij.plugin.filter.PlugInFilter)
  • Hough_Circle (implements ij.plugin.filter.PlugInFilter)
  • Hough_Largest_Circle (implements ij.plugin.filter.PlugInFilter)
  • registration.HoughTransform
  • features.color.HSB
  • HTTP_ (implements ij.plugin.PlugIn)
  • Reconstructors.Hypervolume_Shuffler (implements ij.plugin.PlugIn)
  • ImageBlender_ (implements ij.plugin.filter.PlugInFilter)
  • ij.ImagePlus (implements java.awt.image.ImageObserver, ij.measure.Measurements)
    • bd.BDUserInterface (implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, java.awt.event.ItemListener)
    • FlowJ.FlowJUserInterface (implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner)
    • OIDOpener_URL (implements ij.plugin.PlugIn)
    • OIDReader_ (implements ij.plugin.PlugIn)
    • SPEReader_ (implements ij.plugin.PlugIn)
  • va.IMAQ
  • bijnum.Jacobi
  • stereodisc.JPStoStack
  • volume.Kernel
    • volume.Kernel1D
      • volume.CentralDiff
      • FlowJ.Demodulation
      • volume.GaborCos
      • volume.GaborSin
      • volume.Gaussian
        • volume.DoG
      • volume.GaussianDerivative
    • volume.Kernel2D
      • volume.Beaudetx
      • volume.Gaussian2D
        • volume.DoG2D
        • volume.GaborCos2D
      • volume.LoG
      • volume.Sobel
    • volume.Kernel3D
      • volume.Gaussian3D
        • volume.DoG3D
      • volume.Sobel3D
    • volume.Kernel4D
      • volume.Sobel4D
  • registration.LocatedCircle
  • Map_MI (implements ij.plugin.filter.PlugInFilter)
  • Map_Timecourse (implements ij.plugin.filter.PlugInFilter)
  • bijfit.Maximum
  • MI_ (implements ij.plugin.filter.PlugInFilter)
  • Montage_Adjusted (implements ij.plugin.PlugIn)
  • Montage_Cutter (implements ij.plugin.filter.PlugInFilter)
  • MontageCutter
  • MontageCutter_II (implements ij.plugin.filter.PlugInFilter)
  • MontageCutter_III (implements ij.plugin.filter.PlugInFilter)
  • MontageCutterII
  • MontageCutterIII
  • Moving_2D_Shapes (implements ij.plugin.PlugIn)
  • Moving_3D_Shape (implements ij.plugin.PlugIn)
  • usbcam.MyDataSinkListener
  • stereodisc.Nidek3DXToJPS
  • Observations_Opener (implements ij.plugin.PlugIn)
  • OCT_3D_analyzer
  • OCT_Reader (implements ij.plugin.PlugIn)
  • of3d.OF3DDeformation
  • of3d.OF3DDeformer
  • retina.OIDAnalysisMethods
  • retina.OIDAnalyzer (implements retina.OIDBaseAnalyzer)
    • retina.OIDAverageAnalyzer
    • retina.OIDbaselineAnalyzer
    • retina.OIDffAllAnalyzer
    • retina.OIDtc
    • retina.OIDTimecourseAnalyzer
      • retina.OIDTimecourseStimulatedAnalyzer
    • retina.OIDXMLAnalyzer
  • retina.OIDDisplayMethods
  • retina.OIDHeader
  • retina.OIDMapsFitter (implements retina.OIDBaseAnalyzer)
  • retina.OIDPCAAnalyzer (implements retina.OIDBaseAnalyzer)
  • retina.OIDProcessor
  • retina.OIDroiAnalyzer (implements retina.OIDBaseAnalyzer)
    • retina.OIDamplitudeAnalyzer
    • retina.OIDroiTCAnalyzer
  • retina.OIDROItimecourseAnalyzer (implements retina.OIDBaseAnalyzer)
  • io.OpenPreviewDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.WindowListener)
    • retina.OIDReconstructor (implements java.awt.event.ActionListener)
  • features.color.Opponency
  • Optic_Flow_3D (implements ij.plugin.PlugIn)
  • segmentation.OptimalAdmissibleRegion
  • segmentation.OptimalClosedDualPath
  • segmentation.OptimalClosedDualPath.Bounds
  • segmentation.OptimalClosedPath
  • segmentation.OptimalClosedPath.Bounds
  • segmentation.OptimalConvexRegion
    • segmentation.NormalizedOptimalConvexRegion
  • PCA_ (implements ij.plugin.filter.PlugInFilter)
    • PCA_masked
  • Peak_Finder (implements ij.plugin.filter.PlugInFilter)
  • PGM_Writer (implements ij.plugin.PlugIn)
  • stereodisc.PPMConverter
  • stereodisc.ProbabilitySegmentation
  • va.PVCAM
  • PVCAM_Test (implements ij.plugin.PlugIn)
  • stereo.algorithms.RankFilter
  • registration.Register
  • Register_ROI (implements ij.plugin.filter.PlugInFilter)
    • Register_ROI_MI (implements ij.plugin.filter.PlugInFilter)
    • Register_ROI_MI_Edges (implements ij.plugin.filter.PlugInFilter)
  • registration.Registerer
    • registration.RegisterFFT
    • registration.RegisterFFTHessian
    • registration.RegisterMI
      • registration.RegisterRetina
  • registration.RegisterImageJUtilities (implements ij.plugin.filter.PlugInFilter)
  • Retina_Blobs (implements ij.plugin.filter.PlugInFilter)
  • Retina_Equalize (implements ij.plugin.filter.PlugInFilter)
  • Retina_Register (implements ij.plugin.filter.PlugInFilter)
  • retina.RetinalImage
  • features.color.RGB
  • RGB_AutoLevels (implements ij.plugin.PlugIn)
  • retina.RTA_Reader (implements ij.plugin.PlugIn)
  • retina.RTA_Thickness_Reader (implements ij.plugin.PlugIn)
  • retina.RTAReader
  • Ruggeri_Enhance_Up (implements ij.plugin.filter.PlugInFilter)
  • RuggeriEnhanceUp
  • SaveAsSPE_ (implements ij.plugin.PlugIn)
  • scripts.ScriptProcessor
    • retina.OIDScriptProcessor
  • Slice_Adder (implements ij.plugin.PlugIn)
  • stereodisc.SlideCropper
  • SpeHeader
  • FlowJ.SSD
  • Stack_Averager (implements ij.plugin.PlugIn)
  • stereo.StereoCostFunctions
  • stereo.StereoPairSplitter
  • StereoPairtoJPSConverter
  • stereo.StereoSegmentation
  • stereo.algorithms.StopWatch
  • Subtract_Mean_Pixel (implements ij.plugin.filter.PlugInFilter)
  • SurfaceJ_ (implements ij.plugin.PlugIn)
  • bijnum.SVDC
  • Test_ (implements ij.plugin.filter.PlugInFilter)
  • java.lang.Thread (implements java.lang.Runnable)
    • of3d.OF3DLucas
    • VolumeJ.VJRenderer
      • VJiso.VJIsosurfaceRender
      • VolumeJ.VJIsosurfaceRender
      • VolumeJ.VJRender
      • VolumeJ.VJViewspaceRender
        • of3d.FlowJScintillansRender
    • VolumeJ.VJRenderView
      • VolumeJ.VJRenderViewCine
        • VolumeJ.VJSurfacePlotShell
      • VolumeJ.VJRenderViewInteractive
      • VolumeJ.VJRenderViewSingle
      • VolumeJ.VJRenderViewStereo
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • FlowJ.FlowJException
      • bijnum.SVDCException
  • stereodisc.TIFFFeatureConverter
    • stereodisc.GroundTruthConverter
    • stereodisc.PGMToFeatureConverter
  • stereodisc.TIFFtoJPSConverter
  • bd.TopLevel_Blob_Detection (implements ij.plugin.PlugIn)
  • stereo.algorithms.Transform
  • volume.Transformer
  • USBCam_test (implements ij.plugin.PlugIn)
  • VA_IMAQ_Test (implements ij.plugin.PlugIn)
  • Video_Angiography (implements ij.plugin.PlugIn)
  • VolumeJ.VJAlphaColor
  • VolumeJ.VJBackprojection
  • VolumeJ.VJCell
  • VolumeJ.VJClassifier
    • of3d.OFClassifier
      • of3d.OFClassifierScintillans
        • of3d.OFClassifierScintillansIx255
        • of3d.OFClassifierScintillansIxLT0
        • of3d.OFClassifierScintillansNoFlow
        • of3d.OFClassifierScintillansNoStatic
          • of3d.OFClassifierDCM3DNoGradient
            • of3d.OFClassifierDCM2DNoGradient
    • VolumeJ.VJClassifierInteger
    • VolumeJ.VJClassifierIsosurface
      • VolumeJ.VJClassifierIsosurfaceGrayscale
    • VolumeJ.VJClassifierLevoy
      • VolumeJ.VJClassifierLevoyCueing
      • VolumeJ.VJClassifierLinear
      • VolumeJ.VJClassifierLNoIndex
      • VolumeJ.VJClassifierLNotIndex0
        • VolumeJ.VJClassifierGradientCT
      • VolumeJ.VJClassifierRGB
      • VolumeJ.VJClassifierValue
  • VolumeJ.VJClassifiers
    • of3d.OF3DClassifiers
  • VolumeJ.VJCutout
  • VolumeJ.VJGradient
  • VolumeJ.VJInterpolator
    • VolumeJ.VJNearestNeighbor
    • VolumeJ.VJSplineInterpolator
    • VolumeJ.VJTrilinear
      • of3d.FlowJTrilinearVector
  • VolumeJ.VJLight
  • VolumeJ.VJMatrix
  • VolumeJ.VJPlane
  • VolumeJ.VJProjection
  • VolumeJ.VJReconstructor
  • VolumeJ.VJShade
  • VolumeJ.VJShader
    • VolumeJ.VJOutlineShader
    • VolumeJ.VJPhongShader
  • VolumeJ.VJShape
  • VolumeJ.VJValue
    • of3d.FlowJValue
    • VolumeJ.VJrgbValue
    • VolumeJ.VJValueHSB
  • VolumeJ.VJViewspaceUtil
  • VolumeJ.VJVoxelLoc
  • VolumeJ.VJZBuffer
  • volume.Volume (implements java.io.Serializable)
    • volume.HyperVolume (implements java.io.Serializable)
    • of3d.OF3DFlow (implements java.io.Serializable)
    • VJiso.VJBinaryShell
    • VolumeJ.VJBinaryShell
    • VJiso.VJThresholdedVolume
    • VolumeJ.VJThresholdedVolume
    • volume.VolumeFloat
      • volume.VolumeIO
    • volume.VolumeInteger
    • volume.VolumeRGB
    • volume.VolumeShort
  • Reconstructors.Volume_Deformer (implements ij.plugin.PlugIn)
  • Volume_Reconstructor_ (implements ij.plugin.PlugIn)
  • VolumeJ_ (implements ij.plugin.PlugIn)

Interface Hierarchy

• retina.OIDBaseAnalyzer

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • features.color.HSB.Channel
    • features.color.RGB.Channel
    • features.color.Opponency.Channel