A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

F

Feature - Class in features
Feature defines a feature vector, which is a float[] vector and some other characteristics to make it a feature vector.
Feature(String, double) - Constructor for class features.Feature
 
Feature(String, float[]) - Constructor for class features.Feature
 
Feature(String, byte[]) - Constructor for class features.Feature
 
featureBlobs(float[], int) - Static method in class registration.RegisterRetina
 
FeatureComputer - Class in features
FeatureComputer computes a feature for an image.
FeatureComputer() - Constructor for class features.FeatureComputer
 
featureEdges(float[], int) - Static method in class registration.RegisterRetina
 
featureNamePrefix(int) - Static method in class features.FeatureComputer
make a String that is the prefix for all feature files.
features - package features
 
Features - Class in features
Features defines a collection of features.
Features() - Constructor for class features.Features
 
Features(float[][], int, String) - Constructor for class features.Features
 
features.color - package features.color
 
features.filterBanks - package features.filterBanks
 
fileControlFile - Static variable in class retina.EpochSorter
 
FileNameFilterAcceptOID - Class in retina
Defines a FilenameFilter for KES OID files, for any Java version.
FileNameFilterAcceptOID() - Constructor for class retina.FileNameFilterAcceptOID
 
filter(int, int[], int, String) - Method in class features.filterBanks.Canny
Apply a filter to the image.
filter(int, int[], int, String) - Method in class features.filterBanks.Gabor
Apply a filter to the image.
filter(int, int[], int, String) - Method in class features.filterBanks.GaussianDerivative
Apply a filter to the image.
filter(int, int[], int, String) - Method in class features.filterBanks.Hessian
Apply a filter to the image.
filter(int, int[], int, String) - Method in class features.filterBanks.InvariantGaussianDerivative
Apply a filter to the image.
filter(int, int[], int, String) - Method in class features.filterBanks.RadialGaussianDerivative
Apply a filter to the image.
filter(int, int[], int[], int, String) - Method in class features.filterBanks.Stereo
Apply the filter to a stereo pair.
filter(int, int[], int[], int, String) - Method in class features.filterBanks.StereoDoG
Apply the filter to a stereo pair.
filter(int, int[], int, String) - Method in class features.filterBanks.Variance
Apply a filter to the image.
filter(int, float[], int, float) - Static method in class stereo.algorithms.RankFilter
 
filterAll(ImageStack, int, float, float) - Method in class FlowJ.FlowJFleet
 
filterAll(ImageStack, int, float, float, int) - Method in class FlowJ.FlowJLucas
Do filtering.
filterAll(ImageStack, int, float) - Method in class FlowJ.FlowJSingh
 
filterAll(ImageStack, int, float, float) - Method in class FlowJ.FlowJUras
 
FilterBank - Class in features.filterBanks
 
FilterBank(float[]) - Constructor for class features.filterBanks.FilterBank
Michael should also work with grayscale images, how do we do that?
FilterBank(float[], int[]) - Constructor for class features.filterBanks.FilterBank
 
find(float[], int) - Static method in class bijfit.Maximum
Find the integer position of the maximum in an image of width pixels, i.e.
find(float[]) - Static method in class bijfit.Maximum
Find the index of the maximum in a vector.
Find_Disk - Class in <Unnamed>
This class tries to register a stack.
Find_Disk() - Constructor for class Find_Disk
 
Find_FOV - Class in <Unnamed>
This plugin finds the circle that best fits the FOV in retinal images.
Find_FOV() - Constructor for class Find_FOV
 
findBorderPixels(float[], int) - Static method in class stereo.StereoAnalyzer
Runs a median filter over the image and then applies a roberts cross operator.
findFOV(float[], int, boolean) - Static method in class retina.RetinalImage
 
findFOV(float[], int, boolean, double) - Static method in class retina.RetinalImage
Locate the circular FOV (the boundary of the actual retina in the image).
findMax(float[]) - Static method in class stereo.algorithms.RankFilter
 
findMean(float[]) - Static method in class stereo.algorithms.RankFilter
 
findMedian(float[]) - Static method in class stereo.algorithms.RankFilter
 
findMin(float[]) - Static method in class stereo.algorithms.RankFilter
 
findMinDistancesFromSegmentation(float[], float[], int, float) - Static method in class stereo.StereoAnalyzer
Calculates the minimum distance from each point on the segmented image to the grand truth.
findSubpixel(float[], int) - Static method in class bijfit.Maximum
Find the location of the maximum value in image relative to the center of the image at 0,0) with subpixel accuracy by fitting a quadratic curve to the peak.
findVariance(float[]) - Static method in class stereo.algorithms.RankFilter
 
finished() - Method in class stimulator.StimScreen
 
firstFrame(ImageStack, float, int) - Static method in class FlowJ.FlowJLucas
Return the first frame for which you can compute the flow.
firstframeAnalysis(float[][], float[][], float[][], int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods
Do first frame analysis on each stimulus frame (averaged for each condition) in a separately.
firstframeAnalysisAllFrames(float[][], float[][], int, int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods
Do first frame analysis on all frames (averaged for each condition) in a separately, including the frames which were before the stimulus.
firstframeAnalysisDynamics(float[][], int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods
Make a dynamic movie of the first frame method.
firstframeConditionAnalysis(float[][], int, int, int, int) - Static method in class retina.OIDAnalysisMethods
Do first frame analysis on each condition in a separately.
firstframeDivisionAll(float[][][], float[][], int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods
Do first frame analysis on each frame in a grouped by condition.
firstframeDivisionCompact(float[][], int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods
Do first frame analysis on each stimulus frame (averaged for each condition) very compactly and in place.
firstframeDivisionDouble(float[][], float[][], float[][], int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods
Do first frame analysis on each stimulus frame (averaged for each condition) in a separately using double.
fisher(float[], float[], int, int) - Static method in class bijnum.BIJmulticlass
Determine the Fisher criterior score - a measure of the distance between the mean of class c0 in v and c1 in v.
fit(float[], DesignMatrix) - Static method in class bijfit.GeneralLinearLeastSquares
General least squares fit (with design matrix dm) to vector b.
fit(double[], DesignMatrix) - Static method in class bijfit.GeneralLinearLeastSquares
General least squares fit (with design matrix dm) to vector b.
fit(float[][], DesignMatrix) - Static method in class bijfit.GeneralLinearLeastSquares
General least squares fit (with design matrix dm) to a matrix of vectors b.
fit(float[], int) - Static method in class bijnum.BIJutil
Fit a float image into a new power of 2 size image of newwidth * newwidth.
fit(float[], int, int) - Static method in class bijnum.BIJutil
Fit a square image into a smaller image widthxheight, with the center in the center of the new image.
fit(byte[], int) - Static method in class bijnum.BIJutil
Fit a byte image into a new power of 2 size image of newwidth * newwidth.
fitAnalysis(float[][][], int, double, String, int) - Static method in class retina.OIDAnalysisMethods
Determine the fit of the curve in
flatten(float[][]) - Static method in class bijnum.BIJmatrix
Flatten a float[][] matrix into a float[] matrix of rows each of m[0].width.
flickerDuration - Variable in class stimulator.Cycle
 
flipquad(float[]) - Method in class bijnum.BIJfht
Flip quadrants 1 and 3 and quadrants 2 and 4 of an image column vector.
FLOAT - Static variable in class SpeHeader
 
floatvalue - Variable in class VolumeJ.VJValue
 
flow - Variable in class FlowJ.FlowJError
 
flow - Variable in class of3d.FlowJValue
 
Flow3JColorNoiseMapper - Class in FlowJ
This class maps a flow field in color spotnoise field.
Flow3JColorNoiseMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.Flow3JColorNoiseMapper
 
Flow3JDynamicColorMapper - Class in FlowJ
This class maps dynamic color of a flow field.
Flow3JDynamicColorMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.Flow3JDynamicColorMapper
 
FlowJ - package FlowJ
 
FlowJ_ - Class in <Unnamed>
 
FlowJ_() - Constructor for class FlowJ_
 
FlowJColorNoiseMapper - Class in FlowJ
This class maps a flow field in colored spotnoise format.
FlowJColorNoiseMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJColorNoiseMapper
 
FlowJDisplay - Class in FlowJ
OFDisplay class implements the 2D display of 2D flow fields in different formats.
FlowJDisplay() - Constructor for class FlowJ.FlowJDisplay
 
FlowJDynamicColor - Class in FlowJ
This is a class that implements 2D and 3D Dynamic Color Mapping.
FlowJDynamicColor() - Constructor for class FlowJ.FlowJDynamicColor
 
FlowJDynamicColorMapper - Class in FlowJ
 
FlowJDynamicColorMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJDynamicColorMapper
 
FlowJError - Class in FlowJ
 
FlowJError(int, int) - Constructor for class FlowJ.FlowJError
 
FlowJException - Exception in FlowJ
 
FlowJException(int) - Constructor for exception FlowJ.FlowJException
 
FlowJException(String) - Constructor for exception FlowJ.FlowJException
 
FlowJException() - Constructor for exception FlowJ.FlowJException
 
FlowJFleet - Class in FlowJ
 
FlowJFleet() - Constructor for class FlowJ.FlowJFleet
 
FlowJFlow - Class in FlowJ
This class implements 2D flow fields and methods (including reading and writing and utility methods).
FlowJFlow() - Constructor for class FlowJ.FlowJFlow
 
FlowJFlow(int, int) - Constructor for class FlowJ.FlowJFlow
 
FlowJLucas - Class in FlowJ
This is a class that implements the Lucas and Kanade optical flow algorithm.
FlowJLucas() - Constructor for class FlowJ.FlowJLucas
 
FlowJMapper - Class in FlowJ
This class is the superclass for the OF display mappers.
FlowJMapper() - Constructor for class FlowJ.FlowJMapper
 
FlowJMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJMapper
 
FlowJQuiverMapper - Class in FlowJ
This class maps a quiver map of a flow field.
FlowJQuiverMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJQuiverMapper
 
FlowJScintillansRender - Class in of3d
FlowJScintillansRender.
FlowJScintillansRender(VJInterpolator, VJShader, VJClassifier) - Constructor for class of3d.FlowJScintillansRender
 
FlowJSingh - Class in FlowJ
 
FlowJSingh() - Constructor for class FlowJ.FlowJSingh
 
FlowJSpotNoise - Class in FlowJ
This class implements spot noise displaying of flow fields.
FlowJSpotNoise() - Constructor for class FlowJ.FlowJSpotNoise
 
FlowJSpotNoise(byte[], int, int, double) - Constructor for class FlowJ.FlowJSpotNoise
 
FlowJSpotNoise(int[], int, int, double) - Constructor for class FlowJ.FlowJSpotNoise
 
FlowJSpotNoiseMapper - Class in FlowJ
This class maps spotnoise of a flow field.
FlowJSpotNoiseMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJSpotNoiseMapper
 
FlowJTrilinearVector - Class in of3d
This class implements trilinear interpolation and interpolation of gradients for vector flow volumes.
FlowJTrilinearVector() - Constructor for class of3d.FlowJTrilinearVector
 
FlowJUras - Class in FlowJ
 
FlowJUras() - Constructor for class FlowJ.FlowJUras
 
FlowJUserInterface - Class in FlowJ
This class links the FlowJ classes to the ImageJ interface.
Copyright (c) 1999-2003, Michael Abramoff.
FlowJUserInterface() - Constructor for class FlowJ.FlowJUserInterface
 
FlowJValue - Class in of3d
FlowJValue extends VJValue.
FlowJValue() - Constructor for class of3d.FlowJValue
 
FlowJValue(VJValue, float[]) - Constructor for class of3d.FlowJValue
 
FlowJValue(Object, float[]) - Constructor for class of3d.FlowJValue
 
FlowJValue(VJValue, float, float, float) - Constructor for class of3d.FlowJValue
 
FlowJValue(FlowJValue) - Constructor for class of3d.FlowJValue
 
ForegroundThresholding(ImageProcessor) - Method in class ContrastNormRuggeri
 
formatMatches(Format, Format[]) - Static method in class usbcam.DeviceInfo
 
formatToString(Format) - Static method in class usbcam.DeviceInfo
 
FPCD - Static variable in class bd.BlobDetector
 
FRAME_AVAILABLE - Static variable in class va.PVCAM
 
FRAMEHEIGHT - Static variable in class scripts.ScriptProcessor
 
FRAMEWIDTH - Static variable in class scripts.ScriptProcessor
 
Frequency_finder - Class in <Unnamed>
FFT of selected pixel.
Frequency_finder() - Constructor for class Frequency_finder
 
ftTempDirectory() - Static method in class stereodisc.Conventions
 
ftTrainDirectory() - Static method in class stereodisc.Conventions
 
ftUnseenDirectory() - Static method in class stereodisc.Conventions
 
full - Variable in class FlowJ.FlowJFlow
 
full(int, int) - Method in class FlowJ.FlowJFlow
 
function(double, double, double, double, double) - Method in class volume.GaborCos2D
 
functionName - Static variable in class retina.OIDAnalyzer
 
functionName - Static variable in class retina.OIDMapsFitter
 
functionName - Static variable in class retina.OIDPCAAnalyzer
 
functionName - Static variable in class retina.OIDroiAnalyzer
 
functionName - Static variable in class retina.OIDROItimecourseAnalyzer
 

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