A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

F

Feature - Class in features

Feature defines a feature vector, which is a float[] vector and some other characteristics to make it a feature vector.

Feature(String, double) - Constructor for class features.Feature

Feature(String, float[]) - Constructor for class features.Feature

Feature(String, byte[]) - Constructor for class features.Feature

featureBlobs(float[], int) - Static method in class registration.RegisterRetina

FeatureComputer - Class in features

FeatureComputer computes a feature for an image.

FeatureComputer() - Constructor for class features.FeatureComputer

featureEdges(float[], int) - Static method in class registration.RegisterRetina

featureNamePrefix(int) - Static method in class features.FeatureComputer

make a String that is the prefix for all feature files.

features - package features

Features - Class in features

Features defines a collection of features.

Features() - Constructor for class features.Features

Features(float[][], int, String) - Constructor for class features.Features

features.color - package features.color

features.filterBanks - package features.filterBanks

fileControlFile - Static variable in class retina.EpochSorter

FileNameFilterAcceptOID - Class in retina

Defines a FilenameFilter for KES OID files, for any Java version.

FileNameFilterAcceptOID() - Constructor for class retina.FileNameFilterAcceptOID

filter(int, int[], int, String) - Method in class features.filterBanks.Canny

Apply a filter to the image.

filter(int, int[], int, String) - Method in class features.filterBanks.Gabor

Apply a filter to the image.

filter(int, int[], int, String) - Method in class features.filterBanks.GaussianDerivative

Apply a filter to the image.

filter(int, int[], int, String) - Method in class features.filterBanks.Hessian

Apply a filter to the image.

filter(int, int[], int, String) - Method in class features.filterBanks.InvariantGaussianDerivative

Apply a filter to the image.

filter(int, int[], int, String) - Method in class features.filterBanks.RadialGaussianDerivative

Apply a filter to the image.

filter(int, int[], int[], int, String) - Method in class features.filterBanks.Stereo

Apply the filter to a stereo pair.

filter(int, int[], int[], int, String) - Method in class features.filterBanks.StereoDoG

Apply the filter to a stereo pair.

filter(int, int[], int, String) - Method in class features.filterBanks.Variance

Apply a filter to the image.

filter(int, float[], int, float) - Static method in class stereo.algorithms.RankFilter

filterAll(ImageStack, int, float, float) - Method in class FlowJ.FlowJFleet

filterAll(ImageStack, int, float, float, int) - Method in class FlowJ.FlowJLucas

Do filtering.

filterAll(ImageStack, int, float) - Method in class FlowJ.FlowJSingh

filterAll(ImageStack, int, float, float) - Method in class FlowJ.FlowJUras

FilterBank - Class in features.filterBanks

FilterBank(float[]) - Constructor for class features.filterBanks.FilterBank

Michael should also work with grayscale images, how do we do that?

FilterBank(float[], int[]) - Constructor for class features.filterBanks.FilterBank

find(float[], int) - Static method in class bijfit.Maximum

Find the integer position of the maximum in an image of width pixels, i.e.

find(float[]) - Static method in class bijfit.Maximum

Find the index of the maximum in a vector.

Find_Disk - Class in <Unnamed>

This class tries to register a stack.

Find_Disk() - Constructor for class Find_Disk

Find_FOV - Class in <Unnamed>

This plugin finds the circle that best fits the FOV in retinal images.

Find_FOV() - Constructor for class Find_FOV

findBorderPixels(float[], int) - Static method in class stereo.StereoAnalyzer

Runs a median filter over the image and then applies a roberts cross operator.

findFOV(float[], int, boolean) - Static method in class retina.RetinalImage

findFOV(float[], int, boolean, double) - Static method in class retina.RetinalImage

Locate the circular FOV (the boundary of the actual retina in the image).

findMax(float[]) - Static method in class stereo.algorithms.RankFilter

findMean(float[]) - Static method in class stereo.algorithms.RankFilter

findMedian(float[]) - Static method in class stereo.algorithms.RankFilter

findMin(float[]) - Static method in class stereo.algorithms.RankFilter

findMinDistancesFromSegmentation(float[], float[], int, float) - Static method in class stereo.StereoAnalyzer

Calculates the minimum distance from each point on the segmented image to the grand truth.

findSubpixel(float[], int) - Static method in class bijfit.Maximum

Find the location of the maximum value in image relative to the center of the image at 0,0) with subpixel accuracy by fitting a quadratic curve to the peak.

findVariance(float[]) - Static method in class stereo.algorithms.RankFilter

finished() - Method in class stimulator.StimScreen

firstFrame(ImageStack, float, int) - Static method in class FlowJ.FlowJLucas

Return the first frame for which you can compute the flow.

firstframeAnalysis(float[][], float[][], float[][], int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods

Do first frame analysis on each stimulus frame (averaged for each condition) in a separately.

firstframeAnalysisAllFrames(float[][], float[][], int, int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods

Do first frame analysis on all frames (averaged for each condition) in a separately, including the frames which were before the stimulus.

firstframeAnalysisDynamics(float[][], int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods

Make a dynamic movie of the first frame method.

firstframeConditionAnalysis(float[][], int, int, int, int) - Static method in class retina.OIDAnalysisMethods

Do first frame analysis on each condition in a separately.

firstframeDivisionAll(float[][][], float[][], int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods

Do first frame analysis on each frame in a grouped by condition.

firstframeDivisionCompact(float[][], int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods

Do first frame analysis on each stimulus frame (averaged for each condition) very compactly and in place.

firstframeDivisionDouble(float[][], float[][], float[][], int, int, int, int, int, int, int) - Static method in class retina.OIDAnalysisMethods

Do first frame analysis on each stimulus frame (averaged for each condition) in a separately using double.

fisher(float[], float[], int, int) - Static method in class bijnum.BIJmulticlass

Determine the Fisher criterior score - a measure of the distance between the mean of class c0 in v and c1 in v.

fit(float[], DesignMatrix) - Static method in class bijfit.GeneralLinearLeastSquares

General least squares fit (with design matrix dm) to vector b.

fit(double[], DesignMatrix) - Static method in class bijfit.GeneralLinearLeastSquares

General least squares fit (with design matrix dm) to vector b.

fit(float[][], DesignMatrix) - Static method in class bijfit.GeneralLinearLeastSquares

General least squares fit (with design matrix dm) to a matrix of vectors b.

fit(float[], int) - Static method in class bijnum.BIJutil

Fit a float image into a new power of 2 size image of newwidth * newwidth.

fit(float[], int, int) - Static method in class bijnum.BIJutil

Fit a square image into a smaller image widthxheight, with the center in the center of the new image.

fit(byte[], int) - Static method in class bijnum.BIJutil

Fit a byte image into a new power of 2 size image of newwidth * newwidth.

fitAnalysis(float[][][], int, double, String, int) - Static method in class retina.OIDAnalysisMethods

Determine the fit of the curve in

flatten(float[][]) - Static method in class bijnum.BIJmatrix

Flatten a float[][] matrix into a float[] matrix of rows each of m[0].width.

flickerDuration - Variable in class stimulator.Cycle

flipquad(float[]) - Method in class bijnum.BIJfht

Flip quadrants 1 and 3 and quadrants 2 and 4 of an image column vector.

FLOAT - Static variable in class SpeHeader

floatvalue - Variable in class VolumeJ.VJValue

flow - Variable in class FlowJ.FlowJError

flow - Variable in class of3d.FlowJValue

Flow3JColorNoiseMapper - Class in FlowJ

This class maps a flow field in color spotnoise field.

Flow3JColorNoiseMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.Flow3JColorNoiseMapper

Flow3JDynamicColorMapper - Class in FlowJ

This class maps dynamic color of a flow field.

Flow3JDynamicColorMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.Flow3JDynamicColorMapper

FlowJ - package FlowJ

FlowJ_ - Class in <Unnamed>

FlowJ_() - Constructor for class FlowJ_

FlowJColorNoiseMapper - Class in FlowJ

This class maps a flow field in colored spotnoise format.

FlowJColorNoiseMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJColorNoiseMapper

FlowJDisplay - Class in FlowJ

OFDisplay class implements the 2D display of 2D flow fields in different formats.

FlowJDisplay() - Constructor for class FlowJ.FlowJDisplay

FlowJDynamicColor - Class in FlowJ

This is a class that implements 2D and 3D Dynamic Color Mapping.

FlowJDynamicColor() - Constructor for class FlowJ.FlowJDynamicColor

FlowJDynamicColorMapper - Class in FlowJ

FlowJDynamicColorMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJDynamicColorMapper

FlowJError - Class in FlowJ

FlowJError(int, int) - Constructor for class FlowJ.FlowJError

FlowJException - Exception in FlowJ

FlowJException(int) - Constructor for exception FlowJ.FlowJException

FlowJException(String) - Constructor for exception FlowJ.FlowJException

FlowJException() - Constructor for exception FlowJ.FlowJException

FlowJFleet - Class in FlowJ

FlowJFleet() - Constructor for class FlowJ.FlowJFleet

FlowJFlow - Class in FlowJ

This class implements 2D flow fields and methods (including reading and writing and utility methods).

FlowJFlow() - Constructor for class FlowJ.FlowJFlow

FlowJFlow(int, int) - Constructor for class FlowJ.FlowJFlow

FlowJLucas - Class in FlowJ

This is a class that implements the Lucas and Kanade optical flow algorithm.

FlowJLucas() - Constructor for class FlowJ.FlowJLucas

FlowJMapper - Class in FlowJ

This class is the superclass for the OF display mappers.

FlowJMapper() - Constructor for class FlowJ.FlowJMapper

FlowJMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJMapper

FlowJQuiverMapper - Class in FlowJ

This class maps a quiver map of a flow field.

FlowJQuiverMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJQuiverMapper

FlowJScintillansRender - Class in of3d

FlowJScintillansRender.

FlowJScintillansRender(VJInterpolator, VJShader, VJClassifier) - Constructor for class of3d.FlowJScintillansRender

FlowJSingh - Class in FlowJ

FlowJSingh() - Constructor for class FlowJ.FlowJSingh

FlowJSpotNoise - Class in FlowJ

This class implements spot noise displaying of flow fields.

FlowJSpotNoise() - Constructor for class FlowJ.FlowJSpotNoise

FlowJSpotNoise(byte[], int, int, double) - Constructor for class FlowJ.FlowJSpotNoise

FlowJSpotNoise(int[], int, int, double) - Constructor for class FlowJ.FlowJSpotNoise

FlowJSpotNoiseMapper - Class in FlowJ

This class maps spotnoise of a flow field.

FlowJSpotNoiseMapper(ImageProcessor, float[][][], int, int, int, double, double, double) - Constructor for class FlowJ.FlowJSpotNoiseMapper

FlowJTrilinearVector - Class in of3d

This class implements trilinear interpolation and interpolation of gradients for vector flow volumes.

FlowJTrilinearVector() - Constructor for class of3d.FlowJTrilinearVector

FlowJUras - Class in FlowJ

FlowJUras() - Constructor for class FlowJ.FlowJUras

FlowJUserInterface - Class in FlowJ

This class links the FlowJ classes to the ImageJ interface.
Copyright (c) 1999-2003, Michael Abramoff.

FlowJUserInterface() - Constructor for class FlowJ.FlowJUserInterface

FlowJValue - Class in of3d

FlowJValue extends VJValue.

FlowJValue() - Constructor for class of3d.FlowJValue

FlowJValue(VJValue, float[]) - Constructor for class of3d.FlowJValue

FlowJValue(Object, float[]) - Constructor for class of3d.FlowJValue

FlowJValue(VJValue, float, float, float) - Constructor for class of3d.FlowJValue

FlowJValue(FlowJValue) - Constructor for class of3d.FlowJValue

ForegroundThresholding(ImageProcessor) - Method in class ContrastNormRuggeri

formatMatches(Format, Format[]) - Static method in class usbcam.DeviceInfo

formatToString(Format) - Static method in class usbcam.DeviceInfo

FPCD - Static variable in class bd.BlobDetector

FRAME_AVAILABLE - Static variable in class va.PVCAM

FRAMEHEIGHT - Static variable in class scripts.ScriptProcessor

FRAMEWIDTH - Static variable in class scripts.ScriptProcessor

Frequency_finder - Class in <Unnamed>

FFT of selected pixel.

Frequency_finder() - Constructor for class Frequency_finder

ftTempDirectory() - Static method in class stereodisc.Conventions

ftTrainDirectory() - Static method in class stereodisc.Conventions

ftUnseenDirectory() - Static method in class stereodisc.Conventions

full - Variable in class FlowJ.FlowJFlow

full(int, int) - Method in class FlowJ.FlowJFlow

function(double, double, double, double, double) - Method in class volume.GaborCos2D

functionName - Static variable in class retina.OIDAnalyzer

functionName - Static variable in class retina.OIDMapsFitter

functionName - Static variable in class retina.OIDPCAAnalyzer

functionName - Static variable in class retina.OIDroiAnalyzer

functionName - Static variable in class retina.OIDROItimecourseAnalyzer