A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

D

D(float[], float[], int, double, float[], String) - Static method in class features.filterBanks.Stereo

Calculate a depth map at the chosen scale.

DanConverter - Class in retina

Implements program for converting dan's data from tsolab to tiff.

DanConverter() - Constructor for class retina.DanConverter

dataset - Variable in class bijnum.BIJknn

The dataset, a MxN matrix of N-dimensional vectors.

dataSinkUpdate(DataSinkEvent) - Method in class usbcam.MyDataSinkListener

daxpy_j(int, double, double[], int, double[], int) - Static method in class bijnum.Blas

This method multiplies a constant times a vector and adds the product to another vector --- dy[ ] = da*dx[ ] + dy[ ].

DB - Static variable in class features.color.Channel

DCM2D - Static variable in class FlowJ.FlowJDisplay

DCM3D - Static variable in class FlowJ.FlowJDisplay

DCM3DNOISE - Static variable in class FlowJ.FlowJDisplay

dcmImage(FlowJFlow, ImageProcessor, double, double) - Static method in class FlowJ.FlowJDisplay

DCNOISE - Static variable in class FlowJ.FlowJDisplay

dcopy_j(int, double[], int, double[], int) - Static method in class bijnum.Blas

This method copies the vector dx[ ] to the vector dy[ ].

dcopyp_j(int, double[], double[], int) - Static method in class bijnum.Blas

This method copies a portion of vector x[ ] to the corresponding portion of vector y[ ].

ddot_j(int, double[], int, double[], int) - Static method in class bijnum.Blas

This method calculates the dot product of two vectors.

debug - Variable in class FlowJ.FlowJLucas

debug - Variable in class FlowJ.FlowJSingh

debug - Variable in class FlowJ.FlowJUras

debug - Variable in class of3d.OF3DLucas

defaultViewport() - Method in class VolumeJ.VJRenderer

Get a default viewport automatically.

delete(String) - Method in class volume.VolumeIO

Demodulation - Class in FlowJ

Demodulation(float, boolean) - Constructor for class FlowJ.Demodulation

depth(float[], float[], int, String) - Method in class features.filterBanks.Stereo

Compute a depth map.

Depth_Coded_Stack_ - Class in <Unnamed>

This class creates a depth coded stack of arbitrary size.

Depth_Coded_Stack_() - Constructor for class Depth_Coded_Stack_

desc() - Static method in class VJiso.VJIsosurfaceRender

desc() - Static method in class VolumeJ.VJIsosurfaceRender

desc() - Static method in class VolumeJ.VJRender

desc() - Static method in class VolumeJ.VJViewspaceRender

description - Static variable in class FlowJ.FlowJDisplay

description - Static variable in class of3d.OF3DDisplay

DesignMatrix - Class in bijfit

DesignMatrix() - Constructor for class bijfit.DesignMatrix

DesignMatrixExponential - Class in bijfit

Design Matrix for simple exponential, to be used in GeneralLeastSquares estimation.

DesignMatrixExponential(float[]) - Constructor for class bijfit.DesignMatrixExponential

Create a design matrix for the exponential function.

DesignMatrixGamma - Class in bijfit

Design Matrix for gamma variate model, to be used in GeneralLeastSquares estimation.

DesignMatrixGamma(float[], float, float) - Constructor for class bijfit.DesignMatrixGamma

Create a design matrix for the derived gamma variate function.

DesignMatrixLinear - Class in bijfit

Design Matrix for linear function, to be used in GeneralLeastSquares estimation.

DesignMatrixLinear(double[]) - Constructor for class bijfit.DesignMatrixLinear

Create a linear model design matrix.

DesignMatrixLinear(float[]) - Constructor for class bijfit.DesignMatrixLinear

Create a linear model design matrix.

DesignMatrixPoly - Class in bijfit

Design Matrix for polynomials, to be used in GeneralLeastSquares estimation.

DesignMatrixPoly(double[], int) - Constructor for class bijfit.DesignMatrixPoly

Create a polynomial model design matrix of the n'th order.

DesignMatrixPoly(int, int) - Constructor for class bijfit.DesignMatrixPoly

Create a polynomial design matrix from a sequence 1..k x's.

destroy() - Method in class Nearest

DET - Static variable in class bd.BlobDetector

det(float[], int, double) - Static method in class volume.Hessian

Compute the determinant of the Hessian matrix of image.

detect() - Method in class bd.BlobDetector

detect(VolumeFloat, double) - Method in class bd.BlobDetector

detectold(VolumeFloat, double) - Method in class bd.BlobDetector

determinant(float[][]) - Static method in class bijnum.BIJmatrix

Compute determinant of m.

DeviceInfo - Class in usbcam

DeviceInfo() - Constructor for class usbcam.DeviceInfo

diag(float[][]) - Static method in class bijnum.BIJmatrix

Get the diagonal vector of (square) matrix m.

diag(float[]) - Static method in class bijnum.BIJmatrix

Get a square matrix with v on the diagonal.

diffPairwise(float[][], int, int, int) - Static method in class retina.OIDAnalysisMethods

Perform pairwise differencing on all conditions.

diffPairwise(float[][], int, int, int) - Method in class retina.OIDStackWindow

Perform pairwise differencing on all conditions.

diffuse - Variable in class VolumeJ.VJLight

Diffusion - Class in volume

This is a class that implements nonlinear diffusion in 2D.

Diffusion(ImagePlus) - Constructor for class volume.Diffusion

Diffusion3D - Class in volume

This is a class that implements nonlinear diffusion in 2D, 3D and 4D.

Diffusion3D() - Constructor for class volume.Diffusion3D

Diffusion_ - Class in <Unnamed>

This is a (preliminary) PlugIn for ImageJ that implements 3D nonlinear diffusion.

Diffusion_() - Constructor for class Diffusion_

Diffusion_4D - Class in <Unnamed>

Diffusion_4D() - Constructor for class Diffusion_4D

directory - Static variable in class retina.DanConverter

directory - Static variable in class retina.EpochSorter

directory - Static variable in class stereodisc.TIFFtoJPSConverter

directory - Static variable in class StereoPairtoJPSConverter

directoryResults - Static variable in class scripts.ScriptProcessor

discreteSupport(Kernel) - Method in class volume.Volume

Returns the minimum depth needed to be able to filter (z-dimension) for the kernel.

discriminant(FlowJFlow, float[][], float[][], float[][]) - Method in class FlowJ.FlowJUras

disparity(float[], float[], int, double, float[], float[]) - Static method in class features.filterBanks.Stereo

Compute disparity from left and right images for shift s.

DISPLAY_SCALING - Static variable in class scripts.ScriptProcessor

DisplayCapabilities - Class in stereodisc

Convert TIFF stereo images/pairs to JPS format.

DisplayCapabilities() - Constructor for class stereodisc.DisplayCapabilities

displayon - Variable in class FlowJ.FlowJLucas

displayon - Variable in class of3d.OF3DLucas

distanceToCenterHorizontal(int, int) - Static method in class features.FeatureComputer

Make a feature with the distance to the center of the image for each pixel.

distanceToCenterRadial(int, int) - Static method in class features.FeatureComputer

Make a feature with the radial distance to the center of the image for each pixel.

distanceToCenterVertical(int, int) - Static method in class features.FeatureComputer

Make a feature with the distance to the center of the image for each pixel.

DISTANCEXT - Static variable in class scripts.ScriptProcessor

DISTANCEXVERTICAL - Static variable in class scripts.ScriptProcessor

DISTANCEYHORIZONTAL - Static variable in class scripts.ScriptProcessor

DISTANCEYT - Static variable in class scripts.ScriptProcessor

div(float[], double) - Static method in class bijnum.BIJmatrix

Divide each entry in v by divisor.

divElements(float[], float[], float[]) - Static method in class bijnum.BIJmatrix

Divide all elements in vector a by elements in b.

divElements(float[][], double) - Static method in class bijnum.BIJmatrix

Divide each entry in m by divisor.

DIVISION - Static variable in class retina.OIDAnalysisMethods

DIVISION - Static variable in class retina.OIDProcessor

dnrm2_j(int, double[], int) - Static method in class bijnum.Blas

This method calculates the Euclidean norm of the vector stored in dx[ ] with storage increment incx.

dnrm2p_j(int, double[], int) - Static method in class bijnum.Blas

This method calculates the Euclidean norm of a portion of a vector x[ ].

doCompute(boolean) - Method in class FlowJ.FlowJUserInterface

Compute the flow for a single or a range of frames in the stack.

doComputeFlow() - Method in class of3d.OF3DUserInterface

Do optic flow computation.

doComputeTestFlow() - Method in class of3d.OF3DUserInterface

does() - Method in class of3d.OFClassifierScintillans

does() - Method in class VolumeJ.VJClassifier

Returns the type of VJAlphaColor this classifier generates: RGB or GRAYSCALE.

does() - Method in class VolumeJ.VJClassifierIsosurface

does() - Method in class VolumeJ.VJClassifierIsosurfaceGrayscale

does() - Method in class VolumeJ.VJClassifierLevoy

Tell calling program that this classifier will return RGB values.

does() - Method in class VolumeJ.VJClassifierLNoIndex

does() - Method in class VolumeJ.VJClassifierRGB

doesCutouts() - Method in class VolumeJ.VJClassifier

This method can be overloaded as necessary.

doesCutouts() - Method in class VolumeJ.VJClassifierIsosurface

doesCutouts() - Method in class VolumeJ.VJClassifierLevoy

Tells the calling program it can process cutouts (slice faces).

doesIndex() - Method in class of3d.OFClassifierDCM2DNoGradient

doesIndex() - Method in class of3d.OFClassifierDCM3DNoGradient

doesIndex() - Method in class of3d.OFClassifierScintillans

doesIndex() - Method in class of3d.OFClassifierScintillansIx255

doesIndex() - Method in class of3d.OFClassifierScintillansIxLT0

doesIndex() - Method in class of3d.OFClassifierScintillansNoFlow

doesIndex() - Method in class of3d.OFClassifierScintillansNoStatic

doesIndex() - Method in class VolumeJ.VJClassifier

Tell renderer whether this classifier can process indices in the voxel value.

doesIndex() - Method in class VolumeJ.VJClassifierIsosurface

doesIndex() - Method in class VolumeJ.VJClassifierLevoy

Tells renderer this classifier can process indices in the voxel values.

doesIndex() - Method in class VolumeJ.VJClassifierLNoIndex

doesIndex() - Method in class VolumeJ.VJClassifierRGB

doesIndex() - Method in class VolumeJ.VJClassifierValue

doesStatic() - Method in class of3d.OFClassifier

doesStatic() - Method in class of3d.OFClassifierScintillans

doesStatic() - Method in class of3d.OFClassifierScintillansNoStatic

doFlatFlow(OF3DFlow) - Method in class of3d.OF3DUserInterface

DOG(float[], float[], int, double, double) - Static method in class features.filterBanks.StereoDoG

Compute a stereo difference image.

DoG - Class in volume

This is a 1D Difference of Gaussian convolution kernel.

DoG(double) - Constructor for class volume.DoG

Create a Difference of Gaussian kernel from standard deviation sigma.

DoG2D - Class in volume

This is a 2D Difference of Gaussian convolution kernel.

DoG2D(double) - Constructor for class volume.DoG2D

DoG3D - Class in volume

This is a 3D Difference of Gaussian convolution kernel.

DoG3D(double) - Constructor for class volume.DoG3D

doPsi() - Method in class of3d.OF3DUserInterface

doStereo - Static variable in class stereodisc.TIFFFeatureConverter

drawCenter(ImageProcessor) - Method in class registration.LocatedCircle

Draws the center on an ImageProcessor.

drawOutline(ImagePlus) - Method in class registration.LocatedCircle

Returns a circle containing the circumference as a Roi.

drotg_j(double[]) - Static method in class bijnum.Blas

This method constructs a Givens plane rotation.

dscal_j(int, double, double[], int) - Static method in class bijnum.Blas

This method scales a vector by a constant.

dscalp_j(int, double, double[], int) - Static method in class bijnum.Blas

This method scales a portion of a vector by a constant.

dsvdc_j(double[][], int, int, double[], double[], double[][], double[][], double[], int) - Static method in class bijnum.SVDC

This method decomposes a n by p matrix X into a product UDVī where ...

dswap_j(int, double[], int, double[], int) - Static method in class bijnum.Blas

This method interchanges two vectors.

DURING - Static variable in class stimulator.Cycle

dx(int, int, int, Kernel1D) - Method in class volume.VolumeFloat

dx - Variable in class VolumeJ.VJVoxelLoc

Difference between ix/iy/iz and x/y/z [0-1].

dy(int, int, int, Kernel1D) - Method in class volume.VolumeFloat

dy - Variable in class VolumeJ.VJVoxelLoc

dz(int, int, int, Kernel1D) - Method in class volume.VolumeFloat

dz - Variable in class VolumeJ.VJVoxelLoc