A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

T

table2x2(float[], float[], int) - Static method in class bijnum.BIJstats

Make a 2x2 table for the observations obs0 and obs1, where an observation c is taken as correct.

tablenxn(float[], float[], int) - Static method in class bijnum.BIJstats

Make a nxn confusion matrix for the observations obs0 and obs1, for n classes.

takeVotes(byte[][]) - Static method in class stereodisc.GroundTruthConverter

From an array of image classifications, take the votes for each pixel and return a single image with each pixel classified as the class that had the most votes.

takeVotes(byte[][], int) - Static method in class stereodisc.GroundTruthConverter

From an array of image classifications, take the votes for each pixel and return a single image with the binned pixel classified as the class that had the most votes.

takeVotes(float[][]) - Static method in class stereodisc.ObserverAccuracy

From an array of image classifications, take the votes for each pixel and return a single image with each pixel classified as the class that had the most votes.

test() - Static method in class bijfit.GeneralLinearLeastSquares

test() - Static method in class bijnum.BIJmatrix

Test_ - Class in <Unnamed>

Test plugin.

Test_() - Constructor for class Test_

testsin(float[]) - Static method in class bijnum.BIJfft

textureHorizontal(float[], int, int, int, int) - Static method in class stereo.StereoCostFunctions

Computes the texture every pixel by subtracting floating windows around each pixel.

thetaSet(int) - Static method in class features.filterBanks.FilterBank

Return a set of good filter orientations (thetas) for filters of order.

threshold - Static variable in class Hough_Circle

threshold - Variable in class registration.HoughTransform

The edge threshold.

threshold(float[], float, float, float) - Static method in class stereo.algorithms.Transform

Thresholds the image based on threshold value T.

thresholdFraction(float[], double) - Static method in class bijnum.BIJstats

thresholdFraction(float[], float) - Static method in class bijnum.BIJstats

Find the value in vector over which fraction of all values in vector lie.

TIFFFeatureConverter - Class in stereodisc

Stereo disk feature creation.

TIFFFeatureConverter() - Constructor for class stereodisc.TIFFFeatureConverter

TIFFtoJPSConverter - Class in stereodisc

Convert stereo images/pairs to JPS format.

TIFFtoJPSConverter() - Constructor for class stereodisc.TIFFtoJPSConverter

tile(float[], int) - Static method in class bijnum.BIJutil

Fit an image into a new image of newwidth * newwidth, where newwidth is next large power of 2 than width.

timecourseBeatAnalysis(float[][], float[][], int, int, int, int, int, float[][]) - Static method in class retina.OIDAnalysisMethods

Do timecourse analysis of the area that is 1 in masks[0] for each condition relative to a baseline area that is 1 in masks[0], averaged between baselineStart and baselineEnd.

TIMED_MODE - Static variable in class va.PVCAM

TIMEFRAME - Static variable in class scripts.ScriptProcessor

tlb - Variable in class VolumeJ.VJVoxelLoc

tlf - Variable in class VolumeJ.VJVoxelLoc

trilinear interpolation weights.

toArray() - Method in class features.Feature

toByte(float[]) - Static method in class bijnum.BIJutil

tofloat(double[]) - Static method in class bijnum.BIJutil

tofloat(byte[]) - Static method in class bijnum.BIJutil

tofloat(int[]) - Static method in class bijnum.BIJutil

toGrid(float[], float[]) - Static method in class FlowJ.FlowJFlow

Translate to grid coordinates.

toLongString() - Method in class VolumeJ.VJClassifier

This method can be overloaded as necessary

toLongString() - Method in class VolumeJ.VJClassifierGradientCT

toLongString() - Method in class VolumeJ.VJClassifierIsosurface

toLongString() - Method in class VolumeJ.VJClassifierLevoy

toLongString() - Method in class VolumeJ.VJClassifierLevoyCueing

toLongString() - Method in class VolumeJ.VJClassifierLNoIndex

toLongString() - Method in class VolumeJ.VJClassifierLNotIndex0

toLongString() - Method in class VolumeJ.VJClassifierRGB

toLongString() - Method in class VolumeJ.VJClassifierValue

toLongString() - Method in class VolumeJ.VJLight

toMatrix(Vector) - Static method in class features.Feature

toMatrix() - Method in class features.Features

TopLevel_Blob_Detection - Class in bd

This is an ImageJ Plugin .

TopLevel_Blob_Detection() - Constructor for class bd.TopLevel_Blob_Detection

toStack() - Method in class FlowJ.FlowJFlow

toStack(OF3DFlow, int, int, float, float) - Static method in class of3d.OF3DDisplay

toStack(OF3DFlow, int, int, float, VolumeFloat, float) - Static method in class of3d.OF3DDisplay

toStack() - Method in class volume.HyperVolume

Convert this hypervolume to a stack.

toString() - Method in class bijfit.DesignMatrix

toString() - Method in class bijnum.BIJJacobi

toString(short[]) - Static method in class bijnum.BIJShortMatrix

toString(float[][]) - Static method in class bijnum.BIJutil

toString(double[][]) - Static method in class bijnum.BIJutil

toString(int[][]) - Static method in class bijnum.BIJutil

toString(float[]) - Static method in class bijnum.BIJutil

toString(double[]) - Static method in class bijnum.BIJutil

toString() - Method in class bijnum.Jacobi

Deprecated.

toString(int) - Static method in class features.color.Channel

toString() - Method in enum features.color.HSB.Channel

toString() - Method in enum features.color.Opponency.Channel

toString() - Method in enum features.color.RGB.Channel

toString() - Method in class features.Feature

toString(Vector) - Static method in class features.Feature

toString(int) - Method in class features.Features

toString(int, double, double) - Static method in class FlowJ.FlowJDisplay

Convert FlowJDisplay parameters to a String.

toString() - Method in exception FlowJ.FlowJException

toString() - Method in class FlowJ.FlowJFleet

toString() - Method in class FlowJ.FlowJLucas

toString() - Method in class FlowJ.FlowJSingh

toString() - Method in class FlowJ.FlowJUras

toString() - Method in class FlowJ.SSD

toString() - Method in class of3d.FlowJValue

toString(int, int, float, VolumeFloat, float) - Static method in class of3d.OF3DDisplay

toString() - Method in class of3d.OF3DLucas

toString() - Method in class of3d.OFClassifierDCM2DNoGradient

toString() - Method in class of3d.OFClassifierDCM3DNoGradient

toString() - Method in class of3d.OFClassifierScintillans

toString() - Method in class of3d.OFClassifierScintillansIx255

toString() - Method in class of3d.OFClassifierScintillansIxLT0

toString() - Method in class of3d.OFClassifierScintillansNoFlow

toString() - Method in class of3d.OFClassifierScintillansNoStatic

toString() - Method in class registration.LocatedCircle

toString() - Method in class registration.RegisterFFT

toString() - Method in class registration.RegisterFFTHessian

toString() - Method in class registration.RegisterMI

toString() - Method in class retina.OIDAnalyzer

toString() - Method in class retina.OIDMapsFitter

toString() - Method in class retina.OIDPCAAnalyzer

toString() - Method in class retina.OIDroiAnalyzer

toString() - Method in class retina.OIDroiTCAnalyzer

toString() - Method in class volume.CentralDiff

toString() - Method in class volume.DoG

toString() - Method in class volume.DoG2D

toString() - Method in class volume.DoG3D

toString() - Method in class volume.Gaussian

toString() - Method in class volume.Gaussian2D

toString() - Method in class volume.Gaussian3D

toString() - Method in class volume.GaussianDerivative

toString() - Method in class volume.HyperVolume

toString() - Method in class volume.Kernel

toString() - Method in class volume.Kernel1D

toString() - Method in class volume.Kernel4D

toString() - Method in class volume.LoG

toString() - Method in class volume.Sobel

toString() - Method in class volume.Sobel3D

toString() - Method in class volume.Sobel4D

toString() - Method in class volume.Volume

Return a string describing the volume.

toString() - Method in class VolumeJ.VJAlphaColor

toString() - Method in class VolumeJ.VJCell

toString(Volume) - Method in class VolumeJ.VJCell

Format a String of the contents of this cell, als include the volume values at the vertex of this cell.

toString() - Method in class VolumeJ.VJClassifier

Return a String with information of this classifier.

toString() - Method in class VolumeJ.VJClassifierLevoy

Tell calling program name of this classifier.

toString() - Method in class VolumeJ.VJClassifierLevoyCueing

toString() - Method in class VolumeJ.VJGradient

toString() - Method in class VolumeJ.VJInterpolator

toString() - Method in class VolumeJ.VJLight

toString() - Method in class VolumeJ.VJMatrix

toString() - Method in class VolumeJ.VJNearestNeighbor

toString() - Method in class VolumeJ.VJOutlineShader

toString() - Method in class VolumeJ.VJPhongShader

toString() - Method in class VolumeJ.VJPlane

toString() - Method in class VolumeJ.VJRenderView

toString() - Method in class VolumeJ.VJShade

toString() - Method in class VolumeJ.VJShader

toString() - Method in class VolumeJ.VJTrilinear

toString() - Method in class VolumeJ.VJValue

toString() - Method in class VolumeJ.VJVoxelLoc

toStringFaces() - Method in class VolumeJ.VJCell

Format a String from the equations of all faces in this cell.

toStringVertices(float[][]) - Method in class VolumeJ.VJCell

Format a String from the extents of this cell.

totalVariance - Variable in class bijnum.BIJpca

Total accumulative variance.

toVector(int) - Method in class features.Features

tptest(double[], double[]) - Static method in class bijnum.BIJstats

Perform paired Student's t-test on two data sets data1 and data2, with the the t values into t and the probabilities into prob.

trace(VJValue, VJGradient) - Method in class VolumeJ.VJClassifier

For debugging: print value, index and gradient.

trace(VJValue, VJGradient) - Method in class VolumeJ.VJClassifierIsosurface

trace(int, int) - Method in class VolumeJ.VJRenderer

Start pixeltracing for the i,j pixel in the viewport.

Transform - Class in stereo.algorithms

Transform() - Constructor for class stereo.algorithms.Transform

transform(float[], int, float[]) - Static method in class volume.Transformer

Transform image using the transformation parameters in p.

transform(float[], int, float[], float, float) - Static method in class volume.Transformer

Transform image using the transformation parameters in p.

transform(float[], int, float[][]) - Static method in class volume.Transformer

Bilinearly transform an image using a 2-D transformation matrix m.

transform(ImageProcessor, float[]) - Static method in class volume.Transformer

Transform the image in fp by translation parameters p

Transformer - Class in volume

This class implements static methods for transforming images and volumes.

Transformer() - Constructor for class volume.Transformer

transformVertices(VJMatrix, float[][]) - Static method in class VolumeJ.VJCell

Transform the vertex coordinates of a cell into a different coordinate system.

translate(float[][], double, double, double) - Static method in class bijnum.BIJtransform

Translate a 3-D transformation matrix by these values.

translate(float[][], double, double) - Static method in class bijnum.BIJtransform

Translate a 2-D transformation matrix by these values.

translate(double, double, double) - Method in class VolumeJ.VJMatrix

Translate the coordinate system to tx, ty, tz.

translateCubeTest(float, float, float) - Method in class of3d.OF3DFlow

translateTest(float, float, float) - Method in class of3d.OF3DFlow

transpose(float[][]) - Static method in class bijnum.BIJmatrix

Compute the transpose of a matrix m.

transpose(byte[][]) - Static method in class bijnum.BIJmatrix

Compute the transpose of a matrix m.

trb - Variable in class VolumeJ.VJVoxelLoc

trf - Variable in class VolumeJ.VJVoxelLoc

trueFlow - Variable in class FlowJ.FlowJError

trunc(float[], int) - Static method in class bijnum.BIJmatrix

Truncate a vector to a new length n.

trunc(float[][], int) - Static method in class bijnum.BIJmatrix

Truncate a matrix to a new column length n.

truncatedDifferenceAnalysis(BIJpca, int, int, int, int, int, float[], int, double) - Static method in class retina.OIDAnalysisMethods

Do truncated difference analysis (averaged for each condition) in a separately.

truncatedSequenceAnalysis(BIJpca, int, int, int, int, int, float[], int, double) - Static method in class retina.OIDAnalysisMethods

Performs truncated sequence analysis, i.e.

ttest(float[], float[]) - Static method in class bijnum.BIJstats

Perform Student's t-test on two data sets data1 and data2, with the the t values into t and the probabilities into prob.

ttest(double[], double[]) - Static method in class bijnum.BIJstats

Perform Student's t-test on two data sets data1 and data2, with the the t values into t and the probabilities into prob.

tx - Variable in class VolumeJ.VJLight

ty - Variable in class VolumeJ.VJLight

TYPE_BOOLEAN - Static variable in class va.PVCAM

TYPE_ENUM - Static variable in class va.PVCAM

TYPE_FLT64 - Static variable in class va.PVCAM

TYPE_INT16 - Static variable in class va.PVCAM

TYPE_UNS16 - Static variable in class va.PVCAM

tz - Variable in class VolumeJ.VJLight