A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

P

p - Variable in class registration.SearchMI

The parameters that can be set by setDoubleArrayParameter.

paint(Graphics) - Method in class Nearest

PARAM_CCS_STATUS - Static variable in class va.PVCAM

PARAM_CIRC_BUFFER - Static variable in class va.PVCAM

PARAM_CLEAR_MODE - Static variable in class va.PVCAM

PARAM_EXP_MIN_TIME - Static variable in class va.PVCAM

PARAM_GAIN_INDEX - Static variable in class va.PVCAM

PARAM_GAIN_MULT_ENABLE - Static variable in class va.PVCAM

PARAM_GAIN_MULT_FACTOR - Static variable in class va.PVCAM

PARAM_PAR_SIZE - Static variable in class va.PVCAM

PARAM_READOUT_PORT - Static variable in class va.PVCAM

PARAM_SER_SIZE - Static variable in class va.PVCAM

PARAM_SHTR_CLOSE_DELAY - Static variable in class va.PVCAM

PARAM_SHTR_CLOSE_DELAY_UNIT - Static variable in class va.PVCAM

PARAM_SHTR_OPEN_DELAY - Static variable in class va.PVCAM

PARAM_SHTR_OPEN_MODE - Static variable in class va.PVCAM

PARAM_SHTR_STATUS - Static variable in class va.PVCAM

PARAM_TEMP - Static variable in class va.PVCAM

PARAM_TEMP_SETPOINT - Static variable in class va.PVCAM

params(int) - Method in class features.filterBanks.StereoDoG

Determine the order, scale and orientation of a numbered filter.

params() - Method in class volume.Diffusion

params(ImagePlus, VolumeFloat) - Method in class volume.Diffusion3D

params4D(ImagePlus) - Method in class volume.Diffusion3D

PCA_ - Class in <Unnamed>

Plugin to do PCA on the images in a stack.

PCA_() - Constructor for class PCA_

PCA_masked - Class in <Unnamed>

Plugin to do PCA on the images in a stack.

PCA_masked() - Constructor for class PCA_masked

PCAWindow - Class in retina

Window to do various types of PCA analysis.

PCAWindow(ImagePlus, ImageCanvas, BIJpca) - Constructor for class retina.PCAWindow

Create an extended PCA window from a StackWindow.

peak(int, int) - Method in class FlowJ.SSD

Peak_Finder - Class in <Unnamed>

Plugin for ImageJ that finds the peak in an image with subpixel accuracy.

Peak_Finder() - Constructor for class Peak_Finder

peakMag() - Static method in class bijfit.Maximum

performance - Variable in class features.Feature

performance() - Method in class features.Feature

permutation(int) - Method in class VolumeJ.VJMatrix

Make a permutation for one of the major axes (x,y,z) Used for shear-warp rendering.

PGM_Writer - Class in <Unnamed>

This plugin saves ImageJ images as PGM (portable graymap) format images.

PGM_Writer() - Constructor for class PGM_Writer

PGMToFeatureConverter - Class in stereodisc

Converts a directory of PGM files to a multi image TIFF file with a specific order (depends on directory.list) Copyright (c) 1999-2004, Michael Abramoff.

PGMToFeatureConverter() - Constructor for class stereodisc.PGMToFeatureConverter

phi - Variable in class bijnum.BIJgifa

pixel(int, int, int, int, double, double) - Method in class FlowJ.Flow3JColorNoiseMapper

pixel(int, int, int, int, double, double) - Method in class FlowJ.Flow3JDynamicColorMapper

pixel(int, int, int, int, double, double) - Method in class FlowJ.FlowJColorNoiseMapper

pixel(int, int, int, int, double, double) - Method in class FlowJ.FlowJDynamicColorMapper

pixel(int, int, int, int, double, double) - Method in class FlowJ.FlowJMapper

pixel(int, int, int, int, double, double) - Method in class FlowJ.FlowJQuiverMapper

pixel(int, int, int, int, double, double) - Method in class FlowJ.FlowJSpotNoiseMapper

pixelsToDataset(float[][][]) - Static method in class stereodisc.Analyzer

samplePixels contains the pixel values for each sampled image for each feature (N).

pl_cam_close() - Static method in class va.PVCAM

pl_cam_open() - Static method in class va.PVCAM

pl_error_code() - Static method in class va.PVCAM

pl_error_message(int) - Static method in class va.PVCAM

pl_exp_abort(int) - Static method in class va.PVCAM

pl_exp_check_bytecnt() - Static method in class va.PVCAM

pl_exp_check_status() - Static method in class va.PVCAM

pl_exp_finish_seq(short[], short[]) - Static method in class va.PVCAM

pl_exp_get_latest_frame(short[]) - Static method in class va.PVCAM

pl_exp_init_seq() - Static method in class va.PVCAM

pl_exp_set_cont_mode(int) - Static method in class va.PVCAM

pl_exp_setup_cont_single(int, int, int, int, int, int, int, int, int) - Static method in class va.PVCAM

pl_exp_setup_seq_single(int, int, int, int, int, int, int, int, int) - Static method in class va.PVCAM

pl_exp_start_cont(short[]) - Static method in class va.PVCAM

pl_exp_start_seq(short[]) - Static method in class va.PVCAM

pl_exp_stop_cont(int) - Static method in class va.PVCAM

pl_exp_uninit_seq() - Static method in class va.PVCAM

pl_get_enum_param(int, int) - Static method in class va.PVCAM

pl_get_param(int, int) - Static method in class va.PVCAM

pl_get_paramb(int, int) - Static method in class va.PVCAM

pl_get_paramd(int, int) - Static method in class va.PVCAM

pl_get_paraml(int, int) - Static method in class va.PVCAM

pl_get_params(int, int) - Static method in class va.PVCAM

pl_mda_create_seq(int, int, int, int, int, int, int, int, int) - Static method in class va.PVCAM

pl_mda_get_frame(short[], int) - Static method in class va.PVCAM

pl_mda_snap(short[], int, int, int, int, int, int) - Static method in class va.PVCAM

pl_mda_start_seq() - Static method in class va.PVCAM

pl_set_param(int, int) - Static method in class va.PVCAM

pl_set_paraml(int, long) - Static method in class va.PVCAM

pl_set_params(int, short) - Static method in class va.PVCAM

plotParameters(String, float[][]) - Static method in class registration.Register

Plot the parameters in various PlotWindows.

plotParameters(String, float[][]) - Static method in class registration.Registerer

Plot the parameters in various PlotWindows.

polar(float[], float, float) - Static method in class FlowJ.FlowJFlow

polar(float, float) - Static method in class FlowJ.FlowJFlow

polar(float[]) - Static method in class FlowJ.FlowJFlow

Convert a rectangular vector r to a vector in polar coordinates p.

polar(float[], float[]) - Static method in class FlowJ.FlowJFlow

polar(float[], int, Point2D.Float, float, int, int) - Static method in class stereo.algorithms.Transform

Method to "unwrap" an image into polar coordinates.

polar3D(float[], float[]) - Static method in class FlowJ.FlowJFlow

polar3D(float[], float, float, float) - Static method in class FlowJ.FlowJFlow

polarSample(Point2D.Float, Point2D.Float, int, int, float) - Static method in class stereo.algorithms.Transform

Transform a point from x-y coordinates into polar coordinates (sample, ray).

poly(float[], float[]) - Static method in class bijnum.BIJfit

Given a line with points x, y, fit a line y = bx + a through them with linear least squares regression.

polynomialInterpolation(float[], float[], double) - Static method in class bijnum.BIJfit

From Press NR.

POST - Static variable in class stimulator.Cycle

pow(float[][], float) - Static method in class bijnum.BIJmatrix

Compute the power'th power of each entry in the matrix m.

pow(float[], float) - Static method in class bijnum.BIJmatrix

Compute the power'th power of each entry in the matrix m.

pow(double[], double[], double) - Static method in class bijnum.BIJmatrix

Compute the power'th power of each element in vector v and put into r.

pow(float[], double) - Static method in class volume.Convolver

Deprecated.

powElements(float[], float[], double) - Static method in class bijnum.BIJmatrix

Compute the power'th power of each element in vector v and put into r.

PPMConverter - Class in stereodisc

Stereo disk converter.

PPMConverter() - Constructor for class stereodisc.PPMConverter

PRE - Static variable in class stimulator.Cycle

preDefinedOrder - Static variable in class retina.EpochSorter

prefersRegistration() - Method in class retina.OIDAnalyzer

prefersRegistration() - Method in interface retina.OIDBaseAnalyzer

prefersRegistration() - Method in class retina.OIDMapsFitter

prefersRegistration() - Method in class retina.OIDPCAAnalyzer

prefersRegistration() - Method in class retina.OIDroiAnalyzer

prefersRegistration() - Method in class retina.OIDROItimecourseAnalyzer

prefersRegistration() - Method in class retina.OIDTimecourseAnalyzer

prefersRegistration() - Method in class retina.OIDTimecourseStimulatedAnalyzer

prepare(float, float, int) - Method in class of3d.OF3DLucas

printInfo() - Method in class retina.OIDamplitudeAnalyzer

printInfo() - Static method in class retina.OIDAnalyzer

printInfo() - Method in class retina.OIDMapsFitter

printInfo() - Method in class retina.OIDPCAAnalyzer

printInfo() - Method in class retina.OIDroiAnalyzer

printInfo() - Method in class retina.OIDroiTCAnalyzer

printInfo() - Method in class retina.OIDROItimecourseAnalyzer

printUsage() - Static method in class retina.OIDAnalyzer

ProbabilitySegmentation - Class in stereodisc

ProbabilitySegmentation() - Constructor for class stereodisc.ProbabilitySegmentation

probfrequencies(float[], float[], int) - Static method in class bijnum.BIJstats

For a 2 class experiment make a table[2] for class class0 and class1 with for each class the frequencies of each probability.

process() - Method in class retina.OIDScriptProcessor

Process the OID files.

process() - Method in class scripts.ScriptProcessor

Process the OID files.

processObservation(byte[][], int, String, int) - Static method in class stereodisc.GroundTruthConverter

Convert an observation for a basename and observer into a multiclass observation image.

processor - Variable in class retina.OIDStackWindow

prune(int) - Method in class bijnum.BIJknn

Cleans the dataset using Wilson's pruning algorithm.

pseudoinverse(float[][], float[][], double) - Static method in class bijnum.BIJmatrix

Deprecated.

pseudoinverse(double[][], double[][], double) - Static method in class bijnum.BIJmatrix

Deprecated.

psi(int, int) - Method in class FlowJ.FlowJError

psiErr(float[], float[]) - Static method in class of3d.OF3DFlow

putHeaderAsString(File) - Method in class retina.OIDHeader

Writes the header text as a String to the appropriate file

PVCAM - Class in va

API for PVCAM (Roper) interfacing.

PVCAM() - Constructor for class va.PVCAM

PVCAM_Test - Class in <Unnamed>

(c) 2005 Michael Abramoff.

PVCAM_Test() - Constructor for class PVCAM_Test

PVCAMInterface - Class in va

User interface for PVCAM use.

PVCAMInterface() - Constructor for class va.PVCAMInterface

Open a new VAInterface.