A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

M

M - Static variable in class stereo.StereoSegmentation

mag() - Method in class bijnum.BIJfft

Compute power spectrum of FFT 1-D.

magConvolutionxy(float[], int, int, Kernel1D) - Static method in class volume.Convolver

Deprecated.

magConvolutionxy(float[], int, int, Kernel2D) - Static method in class volume.Convolver

Deprecated.

magnitude3D(float[]) - Static method in class FlowJ.FlowJFlow

Return the magnitude of a rectangular motion vector.

main(String[]) - Static method in class Cropper_Scaler

main(String[]) - Static method in class OCT_3D_analyzer

main(String[]) - Static method in class retina.AngiographAnalyzer

main(String[]) - Static method in class retina.DanConverter

main(String[]) - Static method in class retina.EpochSorter

main(String[]) - Static method in class retina.OIDAnalyzer

main(String[]) - Static method in class retina.OIDtc

main(String[]) - Static method in class retina.OIDXMLAnalyzer

main(String[]) - Static method in class stereo.StereoPairSplitter

main(String[]) - Static method in class stereo.StereoSegmentation

main(String[]) - Static method in class stereodisc.ANNAccuracy

main(String[]) - Static method in class stereodisc.ANNMapper

main(String[]) - Static method in class stereodisc.AutomaticAligner

main(String[]) - Static method in class stereodisc.CDRStatistics

main(String[]) - Static method in class stereodisc.DisplayCapabilities

main(String[]) - Static method in class stereodisc.GroundTruthConverter

main(String[]) - Static method in class stereodisc.Illustrator

main(String[]) - Static method in class stereodisc.IxConverter

main(String[]) - Static method in class stereodisc.JPStoStack

main(String[]) - Static method in class stereodisc.Nidek3DXToJPS

main(String[]) - Static method in class stereodisc.ObservationACDRs

main(String[]) - Static method in class stereodisc.ObservationStatistics

main(String[]) - Static method in class stereodisc.ObserverAccuracy

main(String[]) - Static method in class stereodisc.PGMToFeatureConverter

main(String[]) - Static method in class stereodisc.PPMConverter

main(String[]) - Static method in class stereodisc.ProbabilitySegmentation

main(String[]) - Static method in class stereodisc.ROC

main(String[]) - Static method in class stereodisc.SlideCropper

main(String[]) - Static method in class stereodisc.TIFFFeatureConverter

main(String[]) - Static method in class stereodisc.TIFFtoJPSConverter

main(String[]) - Static method in class StereoPairtoJPSConverter

makeFeaturesName(String) - Static method in class stereodisc.Conventions

Make a features filename for basename.

makeFeaturesName(String, String) - Static method in class stereodisc.Conventions

Make a features filename for a basename that starts with basestart.

makeGroundTruthName(String) - Static method in class stereodisc.Conventions

Make a ground truth filename for basename.

makeMaskedNaN(float[], float[]) - Static method in class registration.RegisterRetina

Mask the pixels in a vector image by setting all pixels that have mask == 0 to NaN.

makeMasks(String, boolean) - Method in class retina.OIDroiAnalyzer

makeMasks(String, boolean) - Method in class retina.OIDroiTCAnalyzer

Make ROI masks.

makePower2(float[]) - Static method in class bijnum.BIJutil

Mirror a vector so that is has power of 2 length and does not contain extra edges.

makeStereoPairName(String) - Static method in class stereodisc.Conventions

Make a stereopair filename for basename.

map(byte[], double, double, double) - Static method in class FlowJ.FlowJDynamicColor

This method maps a polar 3d vector with orientations and speed (0-1) to a dynamic color in rgb.

map(double, double, double) - Static method in class FlowJ.FlowJDynamicColor

map(Graphics, int, int, FlowJFlow, FlowJFlow) - Static method in class FlowJ.FlowJError

map(ColorProcessor) - Method in class FlowJ.FlowJError

map(float[], int, int) - Method in class FlowJ.SSD

map() - Method in class volume.VolumeFloat

map2D(byte[], double, double) - Static method in class FlowJ.FlowJDynamicColor

This method maps a polar 2d vector with orientation and magnitude (0-1) to a dynamic color in rgb.

map3D(byte[], double, double, double) - Static method in class FlowJ.FlowJDynamicColor

Transform a polar 3D vector (orientationxy in the xy-plane, orientationz along the z axis and normalized magnitude (0-1)), to a dynamic color in rgb (0-255), with hue standing for orientationxy, intensity standing for orientationz and saturation standing for magnitude.

Map_MI - Class in <Unnamed>

This class maps the MI of thew first reference image in a stack and a (translated) transformed image over a range of (x,y) transformation.

Map_MI() - Constructor for class Map_MI

Map_Timecourse - Class in <Unnamed>

This plug in maps the projection of an image onta a stack of images (representing a timecourse of image).

Map_Timecourse() - Constructor for class Map_Timecourse

mapAverage(Graphics) - Method in class FlowJ.FlowJError

mapClean() - Method in class retina.PCAWindow

Compute a cleaned image sequence from only the attractive eigenvalues.

mapCoordinates() - Method in class retina.PCAWindow

Map the eigenvector matrix into an image.

MAPEXTENT - Static variable in class Map_MI

mapImage(float[][][], boolean[][], ImageProcessor, int, int, double, double, double) - Static method in class FlowJ.FlowJDisplay

Map the 2D flow field f into an imageprocessor ([vx, vy][y][x]).

mapImage(ImageProcessor, int, int, float, float) - Method in class FlowJ.FlowJFlow

mapIndicatorFunction() - Method in class retina.PCAWindow

Compute the indicator function image for two conditions.

MAPRESOLUTION - Static variable in class Map_MI

mapTruncatedDifference() - Method in class retina.PCAWindow

Compute an image that is the truncated difference of the stimulus and non-stimulus conditions stim.

mask(float[], float[]) - Static method in class bijnum.BIJmatrix

Return a vector containing only the elements in v that have a mask value != 0.

MASKFILE - Static variable in class scripts.ScriptProcessor

MASKFREQUENCY - Static variable in class scripts.ScriptProcessor

maskName - Static variable in class stereodisc.TIFFFeatureConverter

MASKSCALE - Static variable in class scripts.ScriptProcessor

maskTimecourseAnalysis(float[][], float[][][][], float[][], float[][], int, int, int, float[][], int) - Static method in class retina.OIDAnalysisMethods

Timecourse analysis using masks over all frames.

MASKTYPE - Static variable in class scripts.ScriptProcessor

MASKTYPE_BARS - Static variable in class scripts.ScriptProcessor

MASKTYPE_BLOCKS - Static variable in class scripts.ScriptProcessor

MASKTYPE_CENTRAL - Static variable in class scripts.ScriptProcessor

MASKTYPE_DIAG - Static variable in class scripts.ScriptProcessor

MASKTYPE_PANELS - Static variable in class scripts.ScriptProcessor

MASKTYPE_T - Static variable in class scripts.ScriptProcessor

matmat_j(double[][], double[][], double[][], int, int, int) - Static method in class bijnum.Blas

This method multiplies an n x p matrix by a p x r matrix.

matrixFromImageStack(ImagePlus) - Static method in class bijnum.BIJutil

Convert the data in the ImageStack in imp into a float[][] matrix for further processing.

matrixFromImageStack(ImageStack) - Static method in class bijnum.BIJutil

Access the data in the ImageStack in imp into a float[][] matrix for further processing.

matrixFromImageStack(ImagePlus, double) - Static method in class bijnum.BIJutil

Convert the data in the ImageStack in imp into a float[][] matrix and scale by scaleFactor on the fly.

matrixFromImageStackRoi(ImagePlus) - Static method in class bijnum.BIJutil

Convert the data only within the rectangular Roi in the ImageStack in imp into a float[][] matrix for further processing.

mattran_j(double[][], double[][], int, int) - Static method in class bijnum.Blas

This method obtains the transpose of an n x p matrix.

matvec_j(double[][], double[], double[], int, int) - Static method in class bijnum.Blas

This method multiplies an n x p matrix by a p x 1 vector.

MAX - Static variable in class stereo.algorithms.RankFilter

maxCircles - Static variable in class Hough_Circle

Maximum - Class in bijfit

This class implements methods to find the maximum pixel value and the location of the maximum value in vectors and 2D images.

Maximum() - Constructor for class bijfit.Maximum

MCutter(ImagePlus) - Method in class MontageCutter

MCutter(ImagePlus) - Method in class MontageCutterII

MCutter(ImagePlus) - Method in class MontageCutterIII

mean(short[]) - Static method in class bijnum.BIJShortMatrix

mean(int, int[], float[], float[][], int, int) - Method in class FlowJ.SSD

MEAN - Static variable in class stereo.algorithms.RankFilter

meanColumn(float[][]) - Static method in class bijnum.BIJstats

meanColumnT(float[][]) - Static method in class bijnum.BIJstats

means(float[][]) - Static method in class bijnum.BIJstats

MEDIAN - Static variable in class stereo.algorithms.RankFilter

mi(short[], short[]) - Method in class bijnum.BIJmi

mi(float[], float[]) - Method in class bijnum.BIJmi

mi(double[]) - Method in class registration.SearchMI

Compute the mutual information of images a and (b transformed according to p).

mi(float[]) - Method in class registration.SearchMI

Compute the mutual information of images a and (b transformed according to p).

MI_ - Class in <Unnamed>

Computes joint histogram and MI for the same Roi from two images.

MI_() - Constructor for class MI_

min(int, int, float[][], int[][]) - Method in class FlowJ.FlowJUras

min() - Method in class FlowJ.SSD

MIN - Static variable in class stereo.algorithms.RankFilter

minCond(int[][], float[][], int) - Method in class FlowJ.FlowJUras

minimumParabolic(float[], float[]) - Static method in class bijnum.BIJfit

Find the minimum y in a vector y (with x values in x) using parabolic interpolation and Brent's algorithm.

minimumStraight(float[], float[]) - Static method in class bijnum.BIJfit

Find the minimum value in a vector x,y.

minMagnitude - Static variable in class FlowJ.Flow3JColorNoiseMapper

minMagnitude - Static variable in class FlowJ.FlowJColorNoiseMapper

minMagnitude - Static variable in class FlowJ.FlowJSpotNoiseMapper

minmax(float[][]) - Static method in class bijnum.BIJmatrix

minmax(float[]) - Static method in class bijnum.BIJmatrix

minmax(short[]) - Static method in class bijnum.BIJShortMatrix

minmax(short[][]) - Static method in class bijnum.BIJShortMatrix

minmax(Volume, VJMatrix) - Static method in class VolumeJ.VJViewspaceUtil

Calculate minimum and maximum extents in xyz viewspace coordinates of volume v.

minmaxNot0(float[]) - Static method in class bijnum.BIJmatrix

minmaxNot0(float[][]) - Static method in class bijnum.BIJmatrix

minPower2(int) - Static method in class bijnum.BIJutil

Find the minimal power of 2 that is larger than n.

mirror(float[], int, int) - Static method in class features.CorrectiveFilters

Compute new image where NaN pixels are mirrored across closest k non-NaN pixels and averaged together.

montage(float[][], int, int) - Static method in class bijnum.BIJutil

Make a montage of all images in a, with columns images per row, so that the width of the returned image will be awidth*columns.

Montage_Adjusted - Class in <Unnamed>

PlugIn to create a montage of all slices in a stack, with each slice adjusted for maximum contrast in that slice.

Montage_Adjusted() - Constructor for class Montage_Adjusted

Montage_Cutter - Class in <Unnamed>

Montage_Cutter() - Constructor for class Montage_Cutter

MontageCutter - Class in <Unnamed>

MontageCutter_II - Class in <Unnamed>

MontageCutter_II() - Constructor for class MontageCutter_II

MontageCutter_III - Class in <Unnamed>

MontageCutter_III() - Constructor for class MontageCutter_III

MontageCutterII - Class in <Unnamed>

MontageCutterIII - Class in <Unnamed>

mousePressed(MouseEvent) - Method in class retina.OIDCanvas

mousePressed(MouseEvent) - Method in class VolumeJ.VJViewerCanvas

Process a mouse button down event.

mouseReleased(MouseEvent) - Method in class VolumeJ.VJViewerCanvas

Process a mouse button up event.

move(float, float, float) - Method in class VolumeJ.VJCell

move(float[]) - Method in class VolumeJ.VJVoxelLoc

Move the location of this voxel with delta's in dos.

move(double, double, double) - Method in class VolumeJ.VJVoxelLoc

Move the location of this voxel with delta's in dos.

Moving_2D_Shapes - Class in <Unnamed>

Moving_2D_Shapes() - Constructor for class Moving_2D_Shapes

Moving_3D_Shape - Class in <Unnamed>

Moving_3D_Shape() - Constructor for class Moving_3D_Shape

mse(float[], float[]) - Static method in class bijnum.BIJstats

Compute Mean Square Error (or residual) of vectors a and b.

mul(float[][], float[][]) - Static method in class bijnum.BIJmatrix

Compute the matrix product of m and n.

mul(float[][], float[][], boolean) - Static method in class bijnum.BIJmatrix

Compute the matrix product of m and n.

mul(float[][], float[][], float[][], boolean) - Static method in class bijnum.BIJmatrix

Compute the matrix product of m and n into r.

mul(float[][], float[]) - Static method in class bijnum.BIJmatrix

Compute the outer product of a matrix and a vector v

mul(float[], double) - Static method in class bijnum.BIJmatrix

Deprecated.

mul(float[][], float[][], double) - Static method in class bijnum.BIJmatrix

Multiply each element in matrix m by a scalar and put result in r.

mul(float[], float[][], float[]) - Static method in class bijnum.BIJmatrix

Compute the outer product of a matrix and a vector v and put the result in r.

mul(double) - Method in class volume.HyperVolume

Multiply all voxels in this hypervolume by a constant.

mul(HyperVolume, HyperVolume) - Method in class volume.HyperVolume

Multiply all voxels in this hypervolume by the voxels in b (NOT the inner product).

mul(double) - Method in class volume.VolumeFloat

mul(VolumeFloat, VolumeFloat) - Method in class volume.VolumeFloat

mul(VolumeFloat) - Method in class volume.VolumeFloat

mul(float[]) - Method in class VolumeJ.VJMatrix

Multiply a vector v with this transformation matrix and return the result as a vector.

mul(VJMatrix) - Method in class VolumeJ.VJMatrix

Multiply this transformation matrix with another transformation matrix in place.

mulElements(double[], double[], double[]) - Static method in class bijnum.BIJmatrix

Multiply all elements in vector a by elements in b and put in r.

mulElements(float[], float[], float[]) - Static method in class bijnum.BIJmatrix

Multiply all elements in vector a by elements in b and put in r.

mulElements(float[], float[]) - Static method in class bijnum.BIJmatrix

Multiply all elements in vector a by elements in b.

mulElements(float[], float[], double) - Static method in class bijnum.BIJmatrix

Multiply each element in v by a scalar and put in r.

mulElements(double[], double[], double) - Static method in class bijnum.BIJmatrix

Multiply each element in v by a scalar and put in r.

mulOuter(float[], float[]) - Static method in class bijnum.BIJmatrix

Compute outer product of vector a and b.

mulT(float[][], float[][], boolean) - Static method in class bijnum.BIJmatrix

Compute the transpose of the outer product of the tranpose of a with b.

multipleFiles - Static variable in class retina.EpochSorter

MyDataSinkListener - Class in usbcam

MyDataSinkListener() - Constructor for class usbcam.MyDataSinkListener